[ 原始碼： sprai ]
套件：sprai（0.9.9.23+dfsg-2）
single-pass sequencing read accuracy improver
Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.
其他與 sprai 有關的套件
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- dep: libc6 (>= 2.17) [arm64]
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
- dep: libc6 (>= 2.7) [除 arm64]
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- dep: ncbi-blast+ (>= 2.2.27)
- next generation suite of BLAST sequence search tools
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: time
- GNU time program for measuring CPU resource usage
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- sug: make
- utility for directing compilation
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- sug: pbalign
- map Pacific Biosciences reads to reference DNA sequences
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- sug: pbgenomicconsensus
- Pacific Biosciences variant and consensus caller
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- sug: pbh5tools
- tools for manipulating Pacific Biosciences HDF5 files