套件：spades（3.13.0+dfsg2-2）

[ 原始碼： spades  ]

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

標籤: 生物學: 核酸, 領域: 生物學, field::biology:bioinformatics, implemented-in::c++, 實做語言: Python, 使用者介面: interface::commandline, role::program, 範圍: 實用程式, 處理: works-with::biological-sequence, works-with::file

其他與 spades 有關的套件

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: bwa

  Burrows-Wheeler Aligner

• dep: libc6 (>= 2.27)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc1 (>= 1:4.0)

  GCC 支援函式庫

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libhat-trie0

  HAT-trie, an extremely efficient (space and time) modern variant of tries

• dep: libnlopt0 (>= 2.2.4)

  nonlinear optimization library

• dep: libssw0

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 6)

  GNU Standard C++ Library v3

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-joblib

  tools to provide lightweight pipelining in Python

• dep: python-yaml

  YAML parser and emitter for Python

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.3.3)

  壓縮函式庫 - 跑程式時用(runtime)

下載 spades

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硬體架構	套件大小	安裝後大小	檔案
amd64	4，643。7 kB	23，056。0 kB	[檔案列表]