[ 原始碼： bamtools ]
套件：bamtools（2.5.1+dfsg-3）
bamtools 的相關連結
Debian 的資源：
下載原始碼套件 bamtools：
維護小組：
- Debian Med Packaging Team (QA 頁面, 郵件存檔)
- Michael R. Crusoe (QA 頁面)
- Andreas Tille (QA 頁面)
- Kevin Murray (QA 頁面)
- Dominique Belhachemi (QA 頁面)
外部的資源：
- 主頁 [github.com]
相似套件：
toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research.
BamTools provides both a C++ API for BAM file support as well as a command-line toolkit.
This is the bamtools command-line toolkit.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
其他與 bamtools 有關的套件
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- dep: libbamtools2.5.1
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.14)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC 支援函式庫
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- dep: libjsoncpp1 (>= 1.7.4)
- library for reading and writing JSON for C++
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3