套件：toppred（1.10-10）

[ 原始碼： toppred  ]

transmembrane topology prediction

Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm.

Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro.

Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png

The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable.

This program is a new implementation of the original toppred program, based on G. von Heijne algorithm

其他與 toppred 有關的套件

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgd3 (>= 2.1.0~alpha~)

  GD Graphics Library

下載 toppred

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	43。4 kB	213。0 kB	[檔案列表]
arm64	41。6 kB	228。0 kB	[檔案列表]
armel	42。8 kB	228。0 kB	[檔案列表]
armhf	40。4 kB	228。0 kB	[檔案列表]
i386	44。2 kB	212。0 kB	[檔案列表]
mips64el	42。9 kB	232。0 kB	[檔案列表]
mipsel	42。7 kB	230。0 kB	[檔案列表]
ppc64el	45。7 kB	229。0 kB	[檔案列表]
s390x	41。4 kB	208。0 kB	[檔案列表]