软件包：toppred（1.10-10）

[ 源代码： toppred  ]

transmembrane topology prediction

Toppred is a program to determine the topology of a transmembrane protein based on G. von Heijne algorithm.

Each sequence from seq data in fasta format is processed, and toppred generate the Hydrophobycity profile of the sequence, and the corresponding hydrophobycities values in the file sequence-ID.hydro.

Furthermore, the predicted topologies are represented as png images. Each topology is stored in file sequence-ID-number.png

The hydrophobicity profile is computed using a window formed by a core rectangular window of size n, flanked by 2 triangular windows of size q. NB rectangular and triangular mean that the ponderation values inside those windows are respectively constant and variable.

This program is a new implementation of the original toppred program, based on G. von Heijne algorithm

其他与 toppred 有关的软件包

• dep: libc6 (>= 2.34)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgd3 (>= 2.1.0~alpha~)

  GD Graphics Library

下载 toppred

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	43.4 kB	213.0 kB	[文件列表]
arm64	41.6 kB	228.0 kB	[文件列表]
armel	42.8 kB	228.0 kB	[文件列表]
armhf	40.4 kB	228.0 kB	[文件列表]
i386	44.2 kB	212.0 kB	[文件列表]
mips64el	42.9 kB	232.0 kB	[文件列表]
mipsel	42.7 kB	230.0 kB	[文件列表]
ppc64el	45.7 kB	229.0 kB	[文件列表]
s390x	41.4 kB	208.0 kB	[文件列表]