Paket: rna-star (2.7.10b+dfsg-2 och andra)

[ Källkod: rna-star  ]

ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

Märken: Biologi: Nucleic Acids, Field: Biologi, field::biology:bioinformatics, implemented-in::c++, Role: Program, Purpose: use::analysing, works-with::biological-sequence

Andra paket besläktade med rna-star

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [ej ppc64el]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 11)

  GNU standardbibliotek v3 för C++

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Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.7.10b+dfsg-2+b2	3.366,2 kbyte	21.813,0 kbyte	[filförteckning]
arm64	2.7.10b+dfsg-2+b2	687,6 kbyte	2.567,0 kbyte	[filförteckning]
mips64el	2.7.10b+dfsg-2+b2	671,8 kbyte	3.133,0 kbyte	[filförteckning]
ppc64el	2.7.10b+dfsg-2+b2	748,8 kbyte	3.079,0 kbyte	[filförteckning]