软件包：sortmerna（4.3.7-2 以及其他的）
tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.
其他与 sortmerna 有关的软件包
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- dep: libc6 (>= 2.38)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC 支持库
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: librocksdb9.8 (>= 9.8.4)
- persistent Key-Value Store for Flash and RAM Storage
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: sse2-support [i386]
- CPU feature checking - require SSE2
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时