Balík: sortmerna (4.3.7-2 a iné)

[ Zdroj: sortmerna  ]

tool for filtering, mapping and OTU-picking NGS reads

SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.

Ostatné balíky súvisiace s balíkom sortmerna

• dep: libc6 (>= 2.38)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: librocksdb9.8 (>= 9.8.4)

  persistent Key-Value Store for Flash and RAM Storage

• dep: libstdc++6 (>= 13.1)

  štandardná knižnica C++ GNU v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: sse2-support [i386]

  CPU feature checking - require SSE2

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

Stiahnuť sortmerna

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	4.3.7-2+b1	572.2 kB	1,857.0 kB	[zoznam súborov]
i386	4.3.7-2+b1	586.3 kB	1,975.0 kB	[zoznam súborov]