[ trixie ]
[ sid ]
[ 源代码: bifrost ]
软件包:libbifrost0(1.3.1-1 以及其他的)
library for parallel construction, indexing and querying of de Bruijn graphs
Libbifrost is the shared library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.
* Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries
其他与 libbifrost0 有关的软件包
|
|
|
|
-
- dep: libc6 (>= 2.34) [除 arm64]
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
-
- dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]
- GCC 支持库
- dep: libgcc-s1 (>= 3.4) [amd64, mips64el, riscv64]
-
- dep: libstdc++6 (>= 13.1) [除 arm64]
- GNU 标准 C++ 库,第3版
- dep: libstdc++6 (>= 14) [arm64]
-
- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
下载 libbifrost0
硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
---|---|---|---|---|
amd64 | 1.3.1-1 | 417.9 kB | 1,436.0 kB | [文件列表] |
arm64 | 1.3.1-1+b1 | 384.9 kB | 1,325.0 kB | [文件列表] |
mips64el | 1.3.1-1 | 350.8 kB | 1,504.0 kB | [文件列表] |
ppc64el | 1.3.1-1 | 435.0 kB | 1,644.0 kB | [文件列表] |
riscv64 | 1.3.1-1 | 424.2 kB | 1,128.0 kB | [文件列表] |
s390x | 1.3.1-1 | 430.1 kB | 1,524.0 kB | [文件列表] |