Package: libbifrost0 (1.3.1-1 and others)

[ Source: bifrost  ]

library for parallel construction, indexing and querying of de Bruijn graphs

Libbifrost is the shared library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Other Packages Related to libbifrost0

• dep: libc6 (>= 2.34) [not arm64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.4) [amd64, mips64el, riscv64]

• dep: libstdc++6 (>= 13.1) [not arm64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [arm64]

• dep: zlib1g (>= 1:1.1.4)

  tömörítő könyvtár - futásidejű

Download libbifrost0

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.3.1-1	417.9 kB	1,436.0 kB	[list of files]
arm64	1.3.1-1+b1	384.9 kB	1,325.0 kB	[list of files]
mips64el	1.3.1-1	350.8 kB	1,504.0 kB	[list of files]
ppc64el	1.3.1-1	435.0 kB	1,644.0 kB	[list of files]
riscv64	1.3.1-1	424.2 kB	1,128.0 kB	[list of files]
s390x	1.3.1-1	430.1 kB	1,524.0 kB	[list of files]