[ 源代码： bio-eagle ]
软件包：bio-eagle（2.4.1-3 以及其他的）
Haplotype phasing within a genotyped cohort or using a phased reference panel
Eagle estimates haplotype phase either within a genotyped cohort or using a phased reference panel. The basic idea of the Eagle1 algorithm is to harness identity-by-descent among distant relatives—which is pervasive at very large sample sizes but rare among smaller numbers of samples—to rapidly call phase using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a full probabilistic model similar to the diploid Li-Stephens model used by previous HMM-based methods.
Please note: The executable was renamed to bio-eagle because of a name clash. Please read more about this in /usr/share/doc/bio-eagle/README.Debian.
其他与 bio-eagle 有关的软件包
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams Library
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- dep: libboost-program-options1.83.0 (>= 1.83.0)
- program options library for C++
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- dep: libc6 (>= 2.34)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC 支持库
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libgomp1 (>= 6)
- GCC OpenMP（GOMP）支持库
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libopenblas0
- Optimized BLAS (linear algebra) library (meta)
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- rec: med-config (>= 2.1)
- Debian Med general config package
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- sug: bio-eagle-examples
- Examples for bio-eagle