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[ 源代码: htslib  ]

软件包:libhts3t64(1.20+ds-1)

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C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

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下载可用于所有硬件架构的
硬件架构 软件包大小 安装后大小 文件
amd64 441.3 kB1,088.0 kB [文件列表]
arm64 406.3 kB1,272.0 kB [文件列表]
armel 384.6 kB979.0 kB [文件列表]
armhf 389.5 kB739.0 kB [文件列表]
i386 483.6 kB1,203.0 kB [文件列表]
mips64el 396.2 kB1,382.0 kB [文件列表]
ppc64el 478.9 kB1,527.0 kB [文件列表]
riscv64 452.5 kB924.0 kB [文件列表]
s390x 443.1 kB1,167.0 kB [文件列表]