[ 源代码： ariba ]
软件包：ariba（2.14.7+ds-5）
Antibiotic Resistance Identification By Assembly
ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.
其他与 ariba 有关的软件包
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- dep: bowtie2
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- dep: cd-hit
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- dep: libc6 (>= 2.14) [amd64]
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libc6 (>= 2.4) [mips64el]
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- dep: libminimap0 (>= 0.2)
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: mummer
- Efficient sequence alignment of full genomes
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- 交互式高级面向对象语言（默认 python3 版本）
- dep: python3 (<< 3.14)
- dep: python3 (>= 3.12~)
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- dep: python3-biopython
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- dep: python3-bs4 (>= 4.1.0)
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- dep: python3-dendropy
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- dep: python3-pymummer
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- dep: python3-pysam
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- dep: python3-tk
- Tkinter - Writing Tk applications with Python 3.x
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- sug: spades
- genome assembler for single-cell and isolates data sets