Paketti: ariba (2.14.7+ds-5)

[ Source: ariba  ]

Antibiotic Resistance Identification By Assembly

ARIBA is a tool that identifies antibiotic resistance genes by running local assemblies. The input is a FASTA file of reference genes and paired sequencing reads. ARIBA reports which of the reference genes were found, plus detailed information on the quality of the assemblies and any variants between the sequencing reads and the reference genes.

Tagit: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::python, User Interface: Command Line, Role: role::program, scope::application, Purpose: Analysing

Muut pakettiin ariba liittyvät paketit

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: fastaq

  FASTA and FASTQ file manipulation tools

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [mips64el]

• dep: libfml0 (>= 0.1)

  library for assembling Illumina short reads in small regions

• dep: libgcc-s1 (>= 3.0)

  GCC:n apukirjasto

• dep: libminimap0 (>= 0.2)

  library for approximate mapping of long biosequences

• dep: libstdc++6 (>= 13.1)

  GNU standardi C++ -kirjasto, versio 3

• dep: mash

  fast genome and metagenome distance estimation using MinHash

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.14)

  dep: python3 (>= 3.12~)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-bs4 (>= 4.1.0)

  error-tolerant HTML parser for Python 3

• dep: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python3-pymummer

  Python 3 interface to MUMmer

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-tk

  Tkinter - Writing Tk applications with Python 3.x

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

• sug: spades

  genome assembler for single-cell and isolates data sets

Imuroi ariba

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	1,911.4 kt	20,596.0 kt	[tiedostoluettelo]
arm64	1,906.3 kt	20,732.0 kt	[tiedostoluettelo]
mips64el	1,908.9 kt	20,740.0 kt	[tiedostoluettelo]
ppc64el	1,910.6 kt	20,732.0 kt	[tiedostoluettelo]
riscv64	1,909.3 kt	20,524.0 kt	[tiedostoluettelo]