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软件包:gsort(0.1.4-3 以及其他的) [debports]

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sort genomic data

gsort is a tool to sort genomic files according to a genomefile. For example, to sort VCF to have order: X, Y, 2, 1, 3, ... and the header needs to be kept at the top.

As a more likely example, if a file nneds to be sorted to match GATK order (1 ... X, Y, MT) which is not possible with any other sorting tool. With gsort one can simply place MT as the last chrom in the ".genome" file.

It will also be useful for getting files ready for use in bedtools.

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硬件架构 版本 软件包大小 安装后大小 文件
x32 (非官方移植版) 0.1.4-3+b10 175.1 kB703.0 kB [文件列表]