软件包:sim4(0.0.20121010-8 以及其他的)
tool for aligning cDNA and genomic DNA
sim4 is a similarity-based tool for aligning an expressed DNA sequence (EST, cDNA, mRNA) with a genomic sequence for the gene. It also detects end matches when the two input sequences overlap at one end (i.e., the start of one sequence overlaps the end of the other).
sim4 employs a blast-based technique to first determine the basic matching blocks representing the "exon cores". In this first stage, it detects all possible exact matches of W-mers (i.e., DNA words of size W) between the two sequences and extends them to maximal scoring gap-free segments. In the second stage, the exon cores are extended into the adjacent as-yet-unmatched fragments using greedy alignment algorithms, and heuristics are used to favor configurations that conform to the splice-site recognition signals (GT-AG, CT-AC). If necessary, the process is repeated with less stringent parameters on the unmatched fragments.
其他与 sim4 有关的软件包
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- dep: libc6 (>= 2.29) [除 alpha, ia64, riscv64, sh4]
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6-udeb
- dep: libc6 (>= 2.31) [sh4]
- dep: libc6 (>= 2.34) [riscv64]
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- dep: libc6.1 (>= 2.29) [alpha]
- GNU C 语言运行库:共享库
同时作为一个虚包由这些包填实: libc6.1-udeb
- dep: libc6.1 (>= 2.31) [ia64]
下载 sim4
硬件架构 | 版本 | 软件包大小 | 安装后大小 | 文件 |
---|---|---|---|---|
alpha (非官方移植版) | 0.0.20121010-8 | 354.4 kB | 1,391.0 kB | [文件列表] |
amd64 | 0.0.20121010-8 | 350.8 kB | 1,371.0 kB | [文件列表] |
arm64 | 0.0.20121010-8 | 346.8 kB | 1,363.0 kB | [文件列表] |
armel | 0.0.20121010-8 | 346.0 kB | 1,362.0 kB | [文件列表] |
armhf | 0.0.20121010-8 | 344.3 kB | 1,334.0 kB | [文件列表] |
hppa (非官方移植版) | 0.0.20121010-8 | 349.0 kB | 1,362.0 kB | [文件列表] |
i386 | 0.0.20121010-8 | 353.0 kB | 1,378.0 kB | [文件列表] |
ia64 (非官方移植版) | 0.0.20121010-8 | 364.7 kB | 1,452.0 kB | [文件列表] |
m68k (非官方移植版) | 0.0.20121010-8 | 340.8 kB | 1,350.0 kB | [文件列表] |
mips64el | 0.0.20121010-8 | 350.1 kB | 1,379.0 kB | [文件列表] |
ppc64 (非官方移植版) | 0.0.20121010-8 | 355.7 kB | 1,408.0 kB | [文件列表] |
ppc64el | 0.0.20121010-8 | 356.3 kB | 1,407.0 kB | [文件列表] |
riscv64 | 0.0.20121010-8+b1 | 352.4 kB | 1,355.0 kB | [文件列表] |
s390x | 0.0.20121010-8 | 349.9 kB | 1,375.0 kB | [文件列表] |
sh4 (非官方移植版) | 0.0.20121010-8 | 349.8 kB | 1,342.0 kB | [文件列表] |
sparc64 (非官方移植版) | 0.0.20121010-8 | 345.9 kB | 1,369.0 kB | [文件列表] |
x32 (非官方移植版) | 0.0.20121010-8 | 349.6 kB | 1,366.0 kB | [文件列表] |