[ bullseye ]
[ sid ]
[ 源代码： igdiscover ]
软件包：igdiscover（0.11-4）
analyzes antibody repertoires to find new V genes
IgDiscover analyzes antibody repertoires and discovers new V genes from high-throughput sequencing reads. Heavy chains, kappa and lambda light chains are supported (to discover VH, VK and VL genes).
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-cutadapt
- Clean biological sequences from high-throughput sequencing reads (Python 3)
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- dep: python3-matplotlib (>= 1.5.0)
- Python based plotting system in a style similar to Matlab
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- dep: python3-numpy
- Fast array facility to the Python language (Python 3)
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- dep: python3-pandas (>= 0.16.2)
- data structures for "relational" or "labeled" data
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- dep: python3-ruamel.yaml
- Roundtrip YAML parser/emitter (Python 3 module)
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- dep: python3-scipy (>= 0.16.1)
- scientific tools for Python 3
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- dep: python3-seaborn (>= 0.9)
- statistical visualization library for Python3
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- dep: python3-sqt
- SeQuencing Tools for biological DNA/RNA high-throughput data
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- dep: python3-xopen (>= 0.3.2)
- Python3 module to open compressed files transparently
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- sug: igdiscover-doc
- analyzes antibody repertoires to find new V genes - doc
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- sug: snakemake
- pythonic workflow management system