软件包：r-bioc-genomicalignments（1.34.0-1）

[ 源代码： r-bioc-genomicalignments  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

其他与 r-bioc-genomicalignments 有关的软件包

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.4) [除 arm64, ppc64el]

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-api-bioc-3.16

  本虚包由这些包填实： r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.37.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.55.7)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.13.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.41.5)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.23.9)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.9.13)

  BioConductor assay container

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-runit

  GNU R package providing unit testing framework

下载 r-bioc-genomicalignments

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	2,062.8 kB	2,909.0 kB	[文件列表]
arm64	2,062.0 kB	2,969.0 kB	[文件列表]
armel	2,058.7 kB	2,904.0 kB	[文件列表]
armhf	2,059.2 kB	2,904.0 kB	[文件列表]
i386	2,025.0 kB	2,874.0 kB	[文件列表]
mips64el	2,058.8 kB	2,975.0 kB	[文件列表]
mipsel	2,059.0 kB	2,910.0 kB	[文件列表]
ppc64el	2,064.2 kB	2,969.0 kB	[文件列表]
s390x	2,061.5 kB	2,913.0 kB	[文件列表]