Paket: r-bioc-genomicalignments (1.34.0-1)

[ Källkod: r-bioc-genomicalignments  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Andra paket besläktade med r-bioc-genomicalignments

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.4) [ej arm64, ppc64el]

• dep: r-api-4.0

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.16

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biocgenerics (>= 0.37.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.55.7)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.13.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.41.5)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.23.9)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.27.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment (>= 1.9.13)

  BioConductor assay container

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• sug: r-cran-runit

  GNU R package providing unit testing framework

Hämta r-bioc-genomicalignments

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	2.062,8 kbyte	2.909,0 kbyte	[filförteckning]
arm64	2.062,0 kbyte	2.969,0 kbyte	[filförteckning]
armel	2.058,7 kbyte	2.904,0 kbyte	[filförteckning]
armhf	2.059,2 kbyte	2.904,0 kbyte	[filförteckning]
i386	2.025,0 kbyte	2.874,0 kbyte	[filförteckning]
mips64el	2.058,8 kbyte	2.975,0 kbyte	[filförteckning]
mipsel	2.059,0 kbyte	2.910,0 kbyte	[filförteckning]
ppc64el	2.064,2 kbyte	2.969,0 kbyte	[filförteckning]
s390x	2.061,5 kbyte	2.913,0 kbyte	[filförteckning]