Paket: sim4 (0.0.20121010-8 ve diğerleri)
sim4 için bağlantılar
Debian Kaynakları:
- Hata Raporları
- Developer Information
- Debian Değişim Günlüğü
- Telif Hakkı Dosyası
- Debian Yama Takipçisi
sim4 Kaynak Paketini İndir:
Geliştiriciler:
Dış Kaynaklar:
- Ana Sayfa [globin.bx.psu.edu]
Benzer paketler:
tool for aligning cDNA and genomic DNA
sim4 is a similarity-based tool for aligning an expressed DNA sequence (EST, cDNA, mRNA) with a genomic sequence for the gene. It also detects end matches when the two input sequences overlap at one end (i.e., the start of one sequence overlaps the end of the other).
sim4 employs a blast-based technique to first determine the basic matching blocks representing the "exon cores". In this first stage, it detects all possible exact matches of W-mers (i.e., DNA words of size W) between the two sequences and extends them to maximal scoring gap-free segments. In the second stage, the exon cores are extended into the adjacent as-yet-unmatched fragments using greedy alignment algorithms, and heuristics are used to favor configurations that conform to the splice-site recognition signals (GT-AG, CT-AC). If necessary, the process is repeated with less stringent parameters on the unmatched fragments.
sim4 ile İlgili Diğer Paketler
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- dep: libc6 (>= 2.29) [riscv64 değil]
- GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
- dep: libc6 (>= 2.34) [riscv64]
sim4 indir
Mimari | Sürüm | Paket Boyutu | Kurulu Boyut | Dosyalar |
---|---|---|---|---|
amd64 | 0.0.20121010-8 | 350,8 kB | 1.371,0 kB | [dosya listesi] |
arm64 | 0.0.20121010-8 | 346,8 kB | 1.363,0 kB | [dosya listesi] |
armel | 0.0.20121010-8 | 346,0 kB | 1.362,0 kB | [dosya listesi] |
armhf | 0.0.20121010-8 | 344,3 kB | 1.334,0 kB | [dosya listesi] |
i386 | 0.0.20121010-8 | 353,0 kB | 1.378,0 kB | [dosya listesi] |
mips64el | 0.0.20121010-8 | 350,1 kB | 1.379,0 kB | [dosya listesi] |
ppc64el | 0.0.20121010-8 | 356,3 kB | 1.407,0 kB | [dosya listesi] |
riscv64 | 0.0.20121010-8+b1 | 352,4 kB | 1.355,0 kB | [dosya listesi] |
s390x | 0.0.20121010-8 | 349,9 kB | 1.375,0 kB | [dosya listesi] |