Paket: pscan-tfbs (1.2.2-4 ve diğerleri)

[ Kaynak: pscan-tfbs  ]

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

pscan-tfbs ile İlgili Diğer Paketler

• dep: libc6 (>= 2.37) [sh4]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.38) [alpha, ia64, loong64, sh4 değil]

  dep: libc6 (>= 2.39) [loong64]

• dep: libc6.1 (>= 2.32) [ia64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libgcc-s1 (>= 3.3.1) [armel, armhf, hppa, ia64, m68k değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgsl27 (>= 2.7.1) [ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgsl28 (>= 2.8+dfsg) [ia64 değil]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.8) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 11) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [ia64 değil]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

pscan-tfbs indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1.2.2-4+b2	68,1 kB	230,0 kB	[dosya listesi]
amd64	1.2.2-4+b3	75,3 kB	209,0 kB	[dosya listesi]
arm64	1.2.2-4+b3	66,2 kB	229,0 kB	[dosya listesi]
armel	1.2.2-4+b3	65,0 kB	172,0 kB	[dosya listesi]
armhf	1.2.2-4+b3	63,1 kB	132,0 kB	[dosya listesi]
hppa (resmi olmayan port)	1.2.2-4+b2	72,0 kB	178,0 kB	[dosya listesi]
i386	1.2.2-4+b3	80,9 kB	212,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	1.2.2-4+b1	95,6 kB	361,0 kB	[dosya listesi]
loong64 (resmi olmayan port)	1.2.2-4+b1	64,4 kB	181,0 kB	[dosya listesi]
m68k (resmi olmayan port)	1.2.2-4+b2	68,2 kB	180,0 kB	[dosya listesi]
mips64el	1.2.2-4+b3	69,6 kB	234,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	1.2.2-4+b2	74,1 kB	229,0 kB	[dosya listesi]
ppc64el	1.2.2-4+b3	75,0 kB	229,0 kB	[dosya listesi]
riscv64	1.2.2-4+b2	71,1 kB	149,0 kB	[dosya listesi]
s390x	1.2.2-4+b3	75,9 kB	201,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	1.2.2-4+b2	85,3 kB	228,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	1.2.2-4+b2	63,6 kB	1.064,0 kB	[dosya listesi]
x32 (resmi olmayan port)	1.2.2-4+b2	74,8 kB	192,0 kB	[dosya listesi]