Package: pscan-tfbs (1.2.2-4 and others)

[ Source: pscan-tfbs  ]

search for transcription factor binding sites

Pscan finds Over-represented Transcription Factor Binding Site Motifs in Sequences from Co-Regulated or Co-Expressed Genes.

Pscan is a software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences. Pscan does not resort to comparisons with orthologous sequences and experimental results show that it compares favorably to other tools for the same task in terms of false positive predictions and computation time. The website is free and open to all users and there is no login requirement.

Other Packages Related to pscan-tfbs

• dep: libc6 (>= 2.37) [sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.38) [not alpha, ia64, sh4]

• dep: libc6.1 (>= 2.32) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf, hppa, ia64, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgsl27 (>= 2.7.1) [ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgsl28 (>= 2.8+dfsg) [not ia64]

  GNU Scientific Library (GSL) -- library package

• dep: libgslcblas0 (>= 2.8) [sparc64]

  GNU Scientific Library (GSL) -- blas library package

• dep: libstdc++6 (>= 11) [ia64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [not ia64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download pscan-tfbs

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.2.2-4+b2	68.1 kB	230.0 kB	[list of files]
amd64	1.2.2-4+b3	75.3 kB	209.0 kB	[list of files]
arm64	1.2.2-4+b3	66.2 kB	229.0 kB	[list of files]
armel	1.2.2-4+b3	65.0 kB	172.0 kB	[list of files]
armhf	1.2.2-4+b3	63.1 kB	132.0 kB	[list of files]
hppa (unofficial port)	1.2.2-4+b2	72.0 kB	178.0 kB	[list of files]
i386	1.2.2-4+b3	80.9 kB	212.0 kB	[list of files]
ia64 (unofficial port)	1.2.2-4+b1	95.6 kB	361.0 kB	[list of files]
m68k (unofficial port)	1.2.2-4+b2	68.2 kB	180.0 kB	[list of files]
mips64el	1.2.2-4+b3	69.6 kB	234.0 kB	[list of files]
ppc64 (unofficial port)	1.2.2-4+b2	74.1 kB	229.0 kB	[list of files]
ppc64el	1.2.2-4+b3	75.0 kB	229.0 kB	[list of files]
riscv64	1.2.2-4+b2	71.1 kB	149.0 kB	[list of files]
s390x	1.2.2-4+b3	75.9 kB	201.0 kB	[list of files]
sh4 (unofficial port)	1.2.2-4+b2	85.3 kB	228.0 kB	[list of files]
sparc64 (unofficial port)	1.2.2-4+b2	63.6 kB	1,064.0 kB	[list of files]
x32 (unofficial port)	1.2.2-4+b2	74.8 kB	192.0 kB	[list of files]