Paket: canu (2.2+dfsg-5 ve diğerleri)

[ Kaynak: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

canu ile İlgili Diğer Paketler

• dep: gnuplot-nox

  Command-line driven interactive plotting program. No-X package
  ayrıca şunun tarafından sağlanan bir sanal paket gnuplot-qt, gnuplot-x11

  ya da gnuplot

  Command-line driven interactive plotting program.
  ayrıca şunun tarafından sağlanan bir sanal paket gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libsnappy1v5 (>= 1.2.1)

  fast compression/decompression library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: mhap

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

canu indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
arm64	2.2+dfsg-5+b1	1.293,4 kB	13.910,0 kB	[dosya listesi]