Paket: canu (1.8+dfsg-2)

[ Kaynak: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

canu ile İlgili Diğer Paketler

• dep: gnuplot

  Command-line driven interactive plotting program.
  ayrıca şunun tarafından sağlanan bir sanal paket gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.14)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc1 (>= 1:3.0)

  GCC support library

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: mhap (>= 2.1.3)

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus

  Pacific Biosciences variant and consensus caller

canu indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	1.971,5 kB	12.736,0 kB	[dosya listesi]