Paket: canu (1.8+dfsg-2)

[ Källkod: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Andra paket besläktade med canu

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• dep: libc6 (>= 2.14)

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• dep: libfilesys-df-perl

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• dep: libgomp1 (>= 4.9)

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• dep: libstdc++6 (>= 5.2)

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• dep: mhap (>= 2.1.3)

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• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus

  Pacific Biosciences variant and consensus caller

Hämta canu

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	1.971,5 kbyte	12.736,0 kbyte	[filförteckning]