Paket: indelible (1.03-5)

[ Kaynak: indelible  ]

powerful and flexible simulator of biological evolution

INDELible is a new, portable, and flexible application for biological sequence simulation that combines many features in the same place for the first time. Using a length-dependent model of indel formation it can simulate evolution of multi-partitioned nucleotide, amino-acid, or codon data sets through the processes of insertion, deletion, and substitution in continuous time.

Nucleotide simulations may use the general unrestricted model or the general time reversible model and its derivatives, and amino-acid simulations can be conducted using fifteen different empirical rate matrices. Substitution rate heterogeneity can be modeled via the continuous and discrete gamma distributions, with or without a proportion of invariant sites. INDELible can also simulate under non-homogeneous and non-stationary conditions where evolutionary models are permitted to change across a phylogeny.

Unique among indel simulation programs, INDELible offers the ability to simulate using codon models that exhibit nonsynonymous/synonymous rate ratio heterogeneity among sites and/or lineages.

indelible ile İlgili Diğer Paketler

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.0) [armel, armhf değil]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

indelible indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	409,5 kB	1.463,0 kB	[dosya listesi]
arm64	371,6 kB	1.291,0 kB	[dosya listesi]
armel	395,9 kB	1.398,0 kB	[dosya listesi]
armhf	402,3 kB	1.194,0 kB	[dosya listesi]
i386	411,5 kB	1.514,0 kB	[dosya listesi]
mips64el	375,9 kB	1.444,0 kB	[dosya listesi]
mipsel	390,3 kB	1.497,0 kB	[dosya listesi]
ppc64el	398,7 kB	1.439,0 kB	[dosya listesi]
s390x	363,4 kB	1.387,0 kB	[dosya listesi]