Paket: biobambam2 (2.0.185+ds-2)

[ Källkod: biobambam2  ]

tools for early stage alignment file processing

This package contains some tools for processing BAM files, including

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Andra paket besläktade med biobambam2

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ppc64el]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4) [ej ppc64el]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libmaus2-2 (>= 2.0.813+ds)

  collection of data structures and algorithms for biobambam

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

Hämta biobambam2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	9.203,8 kbyte	64.327,0 kbyte	[filförteckning]
mips64el	7.602,0 kbyte	75.740,0 kbyte	[filförteckning]
ppc64el	8.944,3 kbyte	76.579,0 kbyte	[filförteckning]
riscv64	8.815,6 kbyte	51.675,0 kbyte	[filförteckning]