Paket: biobambam2 (2.0.179+ds-1)

[ Källkod: biobambam2  ]

tools for early stage alignment file processing

This package contains some tools for processing BAM files, including

  bamsormadup:  parallel sorting and duplicate marking
  bamcollate2:  reads BAM and writes BAM reordered such that alignment
                or collated by query name
  bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                marked using the BAM flags field
  bammaskflags: reads BAM and writes BAM while masking (removing) bits
                from the flags column
  bamrecompress: reads BAM and writes BAM with a defined compression
                 setting. This tool is capable of multi-threading.
  bamsort:       reads BAM and writes BAM resorted by coordinates or
                 query name
  bamtofastq:    reads BAM and writes FastQ; output can be collated
                 or uncollated by query name

Andra paket besläktade med biobambam2

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libmaus2-2 (>= 2.0.768+dfsg)

  collection of data structures and algorithms for biobambam

• dep: libstdc++6 (>= 9)

  GNU standardbibliotek v3 för C++

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

Hämta biobambam2

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	9.201,5 kbyte	65.075,0 kbyte	[filförteckning]
arm64	8.442,3 kbyte	61.559,0 kbyte	[filförteckning]
i386	9.888,3 kbyte	73.243,0 kbyte	[filförteckning]
ppc64el	9.076,5 kbyte	79.263,0 kbyte	[filförteckning]