Paket: fasta3 (36.3.8i.14-Nov-2020-2~0exp0simde och andra)

[ Källkod: fasta3  ]

Experimentellt paket

Varning: Paketet är från den experimentella utgåvan. Det innebär att det med stor sannolikhet är instabilt eller innehåller fel, och kanske till och med kan orsaka dataförluster. Se till att läsa ändringsloggen och annan dokumentation innan du använder det.

tools for searching collections of biological sequences

The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

 * Protein
   - Protein-protein FASTA
   - Protein-protein Smith-Waterman (ssearch)
   - Global Protein-protein (Needleman-Wunsch) (ggsearch)
   - Global/Local protein-protein (glsearch)
   - Protein-protein with unordered peptides (fasts)
   - Protein-protein with mixed peptide sequences (fastf)

 * Nucleotide
   - Nucleotide-Nucleotide (DNA/RNA fasta)
   - Ordered Nucleotides vs Nucleotide (fastm)
   - Un-ordered Nucleotides vs Nucleotide (fasts)

 * Translated
   - Translated DNA (with frameshifts, e.g. ESTs)
     vs Proteins (fastx/fasty)
   - Protein vs Translated DNA (with frameshifts)
     (tfastx/tfasty)
   - Peptides vs Translated DNA (tfasts)

 * Statistical Significance
   - Protein vs Protein shuffle (prss)
   - DNA vs DNA shuffle (prss)
   - Translated DNA vs Protein shuffle (prfx)

 * Local Duplications
   - Local Protein alignments (lalign)
   - Plot Protein alignment "dot-plot" (plalign)
   - Local DNA alignments (lalign)
   - Plot DNA alignment "dot-plot" (plalign)

This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.

Andra paket besläktade med fasta3

• dep: libc6 (>= 2.34) [ej alpha, ia64, sh4]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: python3

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• rec: r-base-core

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• sug: liburi-encode-perl

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• sug: libwww-perl

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• sug: libxml-twig-perl

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• sug: ncbi-blast+

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• sug: perl

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• sug: python3-mysqldb

  Python interface to MySQL

Hämta fasta3

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	36.3.8i.14-Nov-2020-2~0exp0simde	907,5 kbyte	7.534,0 kbyte	[filförteckning]
amd64	36.3.8i.14-Nov-2020-2~0exp0simde	902,0 kbyte	6.970,0 kbyte	[filförteckning]
arm64	36.3.8i.14-Nov-2020-2~0exp0simde	805,3 kbyte	6.702,0 kbyte	[filförteckning]
armel	36.3.8i.14-Nov-2020-2~0exp0simde	811,0 kbyte	6.328,0 kbyte	[filförteckning]
armhf	36.3.8i.14-Nov-2020-2~0exp0simde	775,9 kbyte	4.992,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	36.3.8i.14-Nov-2020-2~0exp0simde	864,1 kbyte	6.245,0 kbyte	[filförteckning]
i386	36.3.8i.14-Nov-2020-2~0exp0simde	852,7 kbyte	6.924,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	36.3.8i.14-Nov-2020-2~0exp0simde	1.074,4 kbyte	11.899,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	36.3.8i.14-Nov-2020-2~0exp0simde	755,5 kbyte	5.887,0 kbyte	[filförteckning]
mips64el	36.3.8i.14-Nov-2020-2~0exp0simde	809,2 kbyte	6.742,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	36.3.8i.14-Nov-2020-2~0exp0simde	872,5 kbyte	7.875,0 kbyte	[filförteckning]
ppc64el	36.3.8i.14-Nov-2020-2~0exp0simde	884,6 kbyte	8.238,0 kbyte	[filförteckning]
riscv64	36.3.8i.14-Nov-2020-2~0exp0simde+b1	1.005,3 kbyte	5.915,0 kbyte	[filförteckning]
s390x	36.3.8i.14-Nov-2020-2~0exp0simde	826,3 kbyte	6.836,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	36.3.8i.14-Nov-2020-2~0exp0simde	929,0 kbyte	6.336,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	36.3.8i.14-Nov-2020-2~0exp0simde	895,6 kbyte	18.263,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	36.3.8i.14-Nov-2020-2~0exp0simde	884,5 kbyte	6.748,0 kbyte	[filförteckning]