Paket: fasttree (2.1.11-2)

[ Källkod: fasttree  ]

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Andra paket besläktade med fasttree

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

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Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	176,6 kbyte	483,0 kbyte	[filförteckning]
arm64	167,5 kbyte	465,0 kbyte	[filförteckning]
armel	172,2 kbyte	509,0 kbyte	[filförteckning]
armhf	164,9 kbyte	385,0 kbyte	[filförteckning]
i386	178,9 kbyte	517,0 kbyte	[filförteckning]
mips64el	171,5 kbyte	527,0 kbyte	[filförteckning]
mipsel	171,8 kbyte	515,0 kbyte	[filförteckning]
ppc64el	181,9 kbyte	635,0 kbyte	[filförteckning]
s390x	166,4 kbyte	493,0 kbyte	[filförteckning]