Paket: fasttree (2.1.11-2 och andra)

Länkar för fasttree

Debianresurser:

Hämta källkodspaketet fasttree:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Steffen Moeller (QA-sida)
Thorsten Alteholz (QA-sida)
Andreas Tille (QA-sida)
Roland Fehrenbacher (QA-sida)

Externa resurser:

Hemsida [www.microbesonline.org]

Liknande paket:

phylogenetic trees from alignments of nucleotide or protein sequences

FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.

FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").

This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).

Andra paket besläktade med fasttree

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.29) [ej arm64, riscv64]

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb

dep: libc6 (>= 2.34) [arm64, riscv64]
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library

Hämta fasttree

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	2.1.11-2	176,6 kbyte	483,0 kbyte	[filförteckning]
arm64	2.1.11-2+b1	171,2 kbyte	507,0 kbyte	[filförteckning]
armel	2.1.11-2	172,2 kbyte	509,0 kbyte	[filförteckning]
armhf	2.1.11-2	164,9 kbyte	385,0 kbyte	[filförteckning]
i386	2.1.11-2	178,9 kbyte	517,0 kbyte	[filförteckning]
mips64el	2.1.11-2	171,5 kbyte	527,0 kbyte	[filförteckning]
ppc64el	2.1.11-2	181,9 kbyte	635,0 kbyte	[filförteckning]
riscv64	2.1.11-2+b1	178,3 kbyte	423,0 kbyte	[filförteckning]
s390x	2.1.11-2	166,4 kbyte	493,0 kbyte	[filförteckning]