Balík: vg (1.30.0+ds-1 a iné)

[ Zdroj: vg  ]

tools for working with genome variation graphs

variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods

Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:

 - nodes, which are labeled by sequences and ids
 - edges, which connect two nodes via either of their respective ends
 - paths, describe genomes, sequence alignments, and annotations (such as gene
  models and transcripts) as walks through nodes connected by edges

This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.

Ostatné balíky súvisiace s balíkom vg

• dep: libatomic1 (>= 4.8)

  pomocná knižnica poskytujúca zabudované funkcie __atomic

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  knižnica volieb programu pre C++

• dep: libc6 (>= 2.33)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: libcairo2 (>= 1.2.4)

  2D vektorová grafická knižnica Cairo

• dep: libdivsufsort3 (>= 2.0.1)

  fast suffix array construction

• dep: libdw1 (>= 0.126) [amd64]

  knižnica poskytujúca prístup k ladiacim informáciám DWARF

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc-s1 (>= 3.4) [mips64el]

  podporná knižnica GCC

  dep: libgcc-s1 (>= 4.2) [amd64]

• dep: libgomp1 (>= 6)

  podporná knižnica GCC OpenMP (GOMP)

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjansson4 (>= 2.14)

  knižnica jazyka C na kódovanie, dekódovanie a prácu s dátami JSON

• dep: libjemalloc2 (>= 5.0.0)

  škálovateľná paralelizovateľná implementácia malloc(3) na všeobecné účely

• dep: libraptor2-0 (>= 2.0.14)

  Raptor 2 - knižnica syntaxe RDF

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 12)

  štandardná knižnica C++ GNU v3

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib1 (>= 1.0.3+dfsg)

  C++ library for parsing and manipulating VCF files

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

Stiahnuť vg

Stiahnuť pre všetky dostupné architektúry

Architektúra	Verzia	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	1.30.0+ds-1+b2	48,532.8 kB	176,762.0 kB	[zoznam súborov]
mips64el	1.30.0+ds-1+b2	6,335.7 kB	33,273.0 kB	[zoznam súborov]