Balík: miniasm (0.3+dfsg-4)

[ Zdroj: miniasm  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Značky: Biológia: Nucleic Acids, Pole: Biológia, field::biology:bioinformatics, implemented-in::c, User Interface: Príkazový riadok, Role: role::program, science::calculation, Purpose: Výpočet, use::comparing, works-with::biological-sequence

Ostatné balíky súvisiace s balíkom miniasm

• dep: libc6 (>= 2.34)

  knižnica GNU C - zdieľané knižnice
  tiež virtuálny balík poskytovaný balíkom libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  komprimačná knižnica - dynamická verzia

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

Stiahnuť miniasm

Stiahnuť pre všetky dostupné architektúry

Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
i386	31.2 kB	78.0 kB	[zoznam súborov]