Пакет: progressivemauve (1.2.0+4713+dfsg-4)
Ссылки для progressivemauve
Ресурсы Debian:
- Сообщения об ошибках
- Developer Information
- Debian журнал изменений
- Файл авторских прав
- Отслеживание заплат Debian
Исходный код progressivemauve:
- [progressivemauve_1.2.0+4713+dfsg-4.dsc]
- [progressivemauve_1.2.0+4713+dfsg.orig.tar.xz]
- [progressivemauve_1.2.0+4713+dfsg-4.debian.tar.xz]
Сопровождающие:
Внешние ресурсы:
- Сайт [darlinglab.org]
Подобные пакеты:
multiple genome alignment algorithms
The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.
Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.
Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.
Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.
Mauve is developed at the University of Wisconsin.
Другие пакеты, относящиеся к progressivemauve
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- dep: libboost-filesystem1.67.0
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-iostreams1.67.0
- библиотека Boost.Iostreams
-
- dep: libboost-program-options1.67.0
- program options library for C++
-
- dep: libboost-system1.67.0
- Operating system (e.g. diagnostics support) library
-
- dep: libc6 (>= 2.14) [amd64]
- библиотека GNU C: динамически подключаемые библиотеки
также виртуальный пакет, предоставляемый libc6-udeb
- dep: libc6 (>= 2.17) [arm64]
- dep: libc6 (>= 2.4) [armhf, i386]
-
- dep: libgcc1 (>= 1:3.0) [amd64, arm64]
- вспомогательная библиотека GCC
- dep: libgcc1 (>= 1:3.5) [armhf]
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libgenome0 [не amd64]
- toolkit for developing bioinformatic related software
- dep: libgenome0 (>= 1.3.11+svn20110227.4616) [amd64]
-
- dep: libmems1
- library to support DNA string matching and comparative genomics
-
- dep: libmuscle1 (>= 3.7+4565)
- multiple alignment library for protein sequences
-
- dep: libstdc++6 (>= 5.2)
- стандартная библиотека GNU C++ версии 3
-
- enh: mauve-aligner
- multiple genome alignment
Загрузка progressivemauve
Архитектура | Размер пакета | В установленном виде | Файлы |
---|---|---|---|
amd64 | 813,0 Кб | 5 172,0 Кб | [список файлов] |
arm64 | 775,5 Кб | 4 713,0 Кб | [список файлов] |
armhf | 619,3 Кб | 2 797,0 Кб | [список файлов] |
i386 | 816,7 Кб | 5 033,0 Кб | [список файлов] |