Paket: progressivemauve (1.2.0+4713+dfsg-4)

[ Källkod: progressivemauve  ]

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been implemented as command-line programs included with the downloadable Mauve software. When run from the command-line, these programs provide options not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics. Aligning whole genomes is a fundamentally different problem than aligning short sequences.

Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources. It employs algorithmic techniques that scale well in the amount of sequence being aligned. For example, a pair of Y. pestis genomes can be aligned in under a minute, while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours.

Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.

Andra paket besläktade med progressivemauve

• dep: libboost-filesystem1.67.0

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.67.0

  Boost.Iostreams Library

• dep: libboost-program-options1.67.0

  program options library for C++

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libc6 (>= 2.14) [amd64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libgcc1 (>= 1:3.0) [amd64, arm64]

  GCC stödbibliotek

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.2) [i386]

• dep: libgenome0 [ej amd64]

  toolkit for developing bioinformatic related software

  dep: libgenome0 (>= 1.3.11+svn20110227.4616) [amd64]

• dep: libmems1

  library to support DNA string matching and comparative genomics

• dep: libmuscle1 (>= 3.7+4565)

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

• enh: mauve-aligner

  multiple genome alignment

Hämta progressivemauve

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	813,0 kbyte	5.172,0 kbyte	[filförteckning]
arm64	775,5 kbyte	4.713,0 kbyte	[filförteckning]
armhf	619,3 kbyte	2.797,0 kbyte	[filförteckning]
i386	816,7 kbyte	5.033,0 kbyte	[filförteckning]