Pacote: parsnp (2.1.3+dfsg-1)

[ Fonte: parsnp  ]

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

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Download de parsnp

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	209.3 kB	1,959.0 kB	[lista de arquivos]
arm64	196.0 kB	1,947.0 kB	[lista de arquivos]
armel	190.5 kB	1,946.0 kB	[lista de arquivos]
armhf	187.1 kB	1,882.0 kB	[lista de arquivos]
i386	205.7 kB	1,950.0 kB	[lista de arquivos]
mips64el	205.3 kB	2,020.0 kB	[lista de arquivos]
ppc64el	216.2 kB	2,011.0 kB	[lista de arquivos]
riscv64	214.3 kB	1,871.0 kB	[lista de arquivos]
s390x	188.2 kB	1,951.0 kB	[lista de arquivos]