软件包：parsnp（2.0.6+dfsg-1）

[ 源代码： parsnp  ]

rapid core genome multi-alignment

Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.

其他与 parsnp 有关的软件包

• dep: fasttree

  phylogenetic trees from alignments of nucleotide or protein sequences

• dep: harvest-tools

  archiving and postprocessing for reference-compressed genomic multi-alignments

• dep: libc6 (>= 2.38)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, riscv64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP（GOMP）支持库

• dep: libmuscle1 (>= 3.7+4565)

  multiple alignment library for protein sequences

• dep: libstdc++6 (>= 14)

  GNU 标准 C++ 库，第3版

• dep: mummer

  Efficient sequence alignment of full genomes

• dep: phipack

  PHI test and other tests of recombination

• dep: python3

  交互式高级面向对象语言（默认 python3 版本）

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pyspoa

  Python bindings to spoa

• dep: python3-tqdm

  fast, extensible progress bar for Python 3 and CLI tool

• dep: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• dep: time

  GNU time program for measuring CPU resource usage

• rec: python3-dendropy

  DendroPy Phylogenetic Computing Library (Python 3)

下载 parsnp

下载可用于所有硬件架构的

硬件架构	软件包大小	安装后大小	文件
amd64	208.2 kB	1,958.0 kB	[文件列表]
arm64	194.8 kB	1,946.0 kB	[文件列表]
armel	190.1 kB	1,905.0 kB	[文件列表]
armhf	186.1 kB	1,829.0 kB	[文件列表]
i386	205.1 kB	1,949.0 kB	[文件列表]
mips64el	203.4 kB	2,019.0 kB	[文件列表]
ppc64el	215.4 kB	2,010.0 kB	[文件列表]
riscv64	213.9 kB	1,870.0 kB	[文件列表]
s390x	187.8 kB	1,950.0 kB	[文件列表]