Pacote: fastml (3.11-3)

[ Fonte: fastml  ]

maximum likelihood ancestral amino-acid sequence reconstruction

FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).

Outros pacotes relacionados a fastml

• dep: libc6 (>= 2.29)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc-s1 (>= 3.0) [não armel, armhf, ppc64el]

  Biblioteca de suporte GCC

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  Biblioteca C++ padrão da GNU v3

Download de fastml

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	902.9 kB	3,394.0 kB	[lista de arquivos]
arm64	761.7 kB	3,050.0 kB	[lista de arquivos]
armel	739.4 kB	3,071.0 kB	[lista de arquivos]
armhf	745.1 kB	2,115.0 kB	[lista de arquivos]
i386	931.6 kB	3,543.0 kB	[lista de arquivos]
mips64el	761.8 kB	4,037.0 kB	[lista de arquivos]
mipsel	777.2 kB	3,976.0 kB	[lista de arquivos]
ppc64el	871.4 kB	3,994.0 kB	[lista de arquivos]
s390x	755.3 kB	3,442.0 kB	[lista de arquivos]