Paquet : fastml (3.11-3)

[ Paquet source : fastml  ]

reconstruction d’ancestrales séquences d’acide aminé par maximum de vraisemblance

FastML is a bioinformatics tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. FastML runs several algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. For character reconstruction the previously described FastML algorithms are used to efficiently infer the most likely ancestral sequences for each internal node of the tree. Both joint and the marginal reconstructions are provided. For indels reconstruction the sequences are first coded according to the indel events detected within the multiple sequence alignment (MSA) and then a state-of-the-art likelihood model is used to reconstruct ancestral indels states. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).

Autres paquets associés à fastml

• dep: libc6 (>= 2.29)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libgcc-s1 (>= 3.0) [non armel, armhf, ppc64el]

  bibliothèque de prise en charge de GCC

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  bibliothèque standard C++ de GNU v3

Télécharger fastml

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	902,9 ko	3 394,0 ko	[liste des fichiers]
arm64	761,7 ko	3 050,0 ko	[liste des fichiers]
armel	739,4 ko	3 071,0 ko	[liste des fichiers]
armhf	745,1 ko	2 115,0 ko	[liste des fichiers]
i386	931,6 ko	3 543,0 ko	[liste des fichiers]
mips64el	761,8 ko	4 037,0 ko	[liste des fichiers]
mipsel	777,2 ko	3 976,0 ko	[liste des fichiers]
ppc64el	871,4 ko	3 994,0 ko	[liste des fichiers]
s390x	755,3 ko	3 442,0 ko	[liste des fichiers]