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[ Fonte: examl  ]

Pacote: examl (3.0.22-1 e outros)

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Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

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Download de examl

Baixe para todas as arquiteturas disponíveis
Arquitetura Versão Tamanho do pacote Tamanho instalado Arquivos
amd64 3.0.22-1+b4 905.5 kB5,858.0 kB [lista de arquivos]
arm64 3.0.22-1+b4 780.4 kB1,540.0 kB [lista de arquivos]
armel 3.0.22-1+b4 797.5 kB1,873.0 kB [lista de arquivos]
armhf 3.0.22-1+b4 786.2 kB1,513.0 kB [lista de arquivos]
i386 3.0.22-1+b4 1,084.5 kB7,220.0 kB [lista de arquivos]
mips64el 3.0.22-1+b4 817.0 kB1,764.0 kB [lista de arquivos]
mipsel 3.0.22-1+b4 830.1 kB1,822.0 kB [lista de arquivos]
ppc64el 3.0.22-1+b4 833.7 kB1,792.0 kB [lista de arquivos]
s390x 3.0.22-1+b4 816.0 kB2,004.0 kB [lista de arquivos]