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Paketti: examl (3.0.22-1 ja muut)

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Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

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Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Versio Paketin koko Koko asennettuna Tiedostot
amd64 3.0.22-1+b4 905.5 kt5,858.0 kt [tiedostoluettelo]
arm64 3.0.22-1+b4 780.4 kt1,540.0 kt [tiedostoluettelo]
armel 3.0.22-1+b4 797.5 kt1,873.0 kt [tiedostoluettelo]
armhf 3.0.22-1+b4 786.2 kt1,513.0 kt [tiedostoluettelo]
i386 3.0.22-1+b4 1,084.5 kt7,220.0 kt [tiedostoluettelo]
mips64el 3.0.22-1+b4 817.0 kt1,764.0 kt [tiedostoluettelo]
mipsel 3.0.22-1+b4 830.1 kt1,822.0 kt [tiedostoluettelo]
ppc64el 3.0.22-1+b4 833.7 kt1,792.0 kt [tiedostoluettelo]
s390x 3.0.22-1+b4 816.0 kt2,004.0 kt [tiedostoluettelo]