Pacote: rna-star (2.7.10b+dfsg-2 e outros)

[ Fonte: rna-star  ]

ultrafast universal RNA-seq aligner

Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.

Etiquetas: Biologia: Ácidos nucleicos, Campo: Biologia, field::biology:bioinformatics, implemented-in::c++, Função: Programa, Propósito: use::analysing, works-with::biological-sequence

Outros pacotes relacionados a rna-star

• dep: libc6 (>= 2.34)

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [não ppc64el]

  Biblioteca de suporte GCC

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

• dep: libgomp1 (>= 6)

  biblioteca de suporte ao GCC OpenMP (GOMP)

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 11)

  Biblioteca C++ padrão da GNU v3

Download de rna-star

Baixe para todas as arquiteturas disponíveis

Arquitetura	Versão	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	2.7.10b+dfsg-2+b2	3,366.2 kB	21,813.0 kB	[lista de arquivos]
arm64	2.7.10b+dfsg-2+b2	687.6 kB	2,567.0 kB	[lista de arquivos]
mips64el	2.7.10b+dfsg-2+b2	671.8 kB	3,133.0 kB	[lista de arquivos]
ppc64el	2.7.10b+dfsg-2+b2	748.8 kB	3,079.0 kB	[lista de arquivos]