Pakket: yanosim (0.1-6 en anderen)

[ Bron: yanosim  ]

read simulator nanopore DRS datasets

Yanosim has three options:

1. yanosim model:

   Creates an model of mismatches, insertions and deletions
   based on an alignment of nanopore DRS reads to a
   reference. Reads should be aligned to a transcriptome
   i.e. without spliced alignment, using minimap2. They
   should have the cs tag.

2. yanosim quantify:

   Quantify the number of reads mapping to each
   transcript in a reference, so that the right number
   of reads can be simulated.

3. yanosim simulate:

   Given a model created using yanosim model, and
   per-transcript read counts created using yanosim
   simulate, simulate error-prone long-reads from the
   given fasta file.

Andere aan yanosim gerelateerde pakketten

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-numpy

  Python library for numerical computations (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

yanosim downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	0.1-6	9,5 kB	45,0 kB	[overzicht]
amd64	0.1-6	9,5 kB	45,0 kB	[overzicht]
arm64	0.1-6	9,5 kB	45,0 kB	[overzicht]
armel	0.1-6	9,5 kB	45,0 kB	[overzicht]
armhf	0.1-6	9,5 kB	45,0 kB	[overzicht]
hppa (unofficial port)	0.1-2	9,1 kB	45,0 kB	[overzicht]
i386	0.1-6	9,5 kB	45,0 kB	[overzicht]
ia64 (unofficial port)	0.1-5	9,4 kB	45,0 kB	[overzicht]
loong64 (unofficial port)	0.1-6	9,5 kB	45,0 kB	[overzicht]
m68k (unofficial port)	0.1-6	9,5 kB	45,0 kB	[overzicht]
mips64el	0.1-6	9,5 kB	45,0 kB	[overzicht]
ppc64 (unofficial port)	0.1-2	9,1 kB	45,0 kB	[overzicht]
ppc64el	0.1-6	9,5 kB	45,0 kB	[overzicht]
riscv64	0.1-6	9,5 kB	45,0 kB	[overzicht]
sh4 (unofficial port)	0.1-6	9,5 kB	45,0 kB	[overzicht]
sparc64 (unofficial port)	0.1-2	9,1 kB	45,0 kB	[overzicht]
x32 (unofficial port)	0.1-6	9,5 kB	45,0 kB	[overzicht]