Pakket: spaced (1.2.0-201605+dfsg-4)

[ Bron: spaced  ]

alignment-free sequence comparison using spaced words

Spaced (Words) is a new approach to alignment-free sequence comparison. While most alignment-free algorithms compare the word-composition of sequences, spaced uses a pattern of care and don't care positions. The occurrence of a spaced word in a sequence is then defined by the characters at the match positions only, while the characters at the don't care positions are ignored. Instead of comparing the frequencies of contiguous words in the input sequences, this new approach compares the frequencies of the spaced words according to the pre-defined pattern. An information-theoretic distance measure is then used to define pairwise distances on the set of input sequences based on their spaced-word frequencies. Systematic test runs on real and simulated sequence sets have shown that, for phylogeny reconstruction, this multiple-spaced-words approach is far superior to the classical alignment-free approach based on contiguous word frequencies.

Andere aan spaced gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgomp1 (>= 9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

spaced downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	58,3 kB	216,0 kB	[overzicht]
amd64	59,4 kB	168,0 kB	[overzicht]
arm64	52,3 kB	152,0 kB	[overzicht]
armel	53,0 kB	151,0 kB	[overzicht]
armhf	51,9 kB	111,0 kB	[overzicht]
hppa (unofficial port)	63,5 kB	165,0 kB	[overzicht]
i386	66,2 kB	179,0 kB	[overzicht]
ia64 (unofficial port)	73,9 kB	301,0 kB	[overzicht]
m68k (unofficial port)	59,2 kB	167,0 kB	[overzicht]
mips64el	58,6 kB	223,0 kB	[overzicht]
ppc64 (unofficial port)	62,4 kB	216,0 kB	[overzicht]
ppc64el	62,0 kB	216,0 kB	[overzicht]
riscv64	57,7 kB	128,0 kB	[overzicht]
s390x	61,9 kB	180,0 kB	[overzicht]
sh4 (unofficial port)	72,2 kB	215,0 kB	[overzicht]
sparc64 (unofficial port)	51,0 kB	1.050,0 kB	[overzicht]
x32 (unofficial port)	59,0 kB	159,0 kB	[overzicht]