Pakket: spaced (1.2.0-201605+dfsg-2)

[ Bron: spaced  ]

alignment-free sequence comparison using spaced words

Spaced (Words) is a new approach to alignment-free sequence comparison. While most alignment-free algorithms compare the word-composition of sequences, spaced uses a pattern of care and don't care positions. The occurrence of a spaced word in a sequence is then defined by the characters at the match positions only, while the characters at the don't care positions are ignored. Instead of comparing the frequencies of contiguous words in the input sequences, this new approach compares the frequencies of the spaced words according to the pre-defined pattern. An information-theoretic distance measure is then used to define pairwise distances on the set of input sequences based on their spaced-word frequencies. Systematic test runs on real and simulated sequence sets have shown that, for phylogeny reconstruction, this multiple-spaced-words approach is far superior to the classical alignment-free approach based on contiguous word frequencies.

Andere aan spaced gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libgomp1 (>= 9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

spaced downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	54,8 kB	153,0 kB	[overzicht]
arm64	48,6 kB	133,0 kB	[overzicht]
armel	48,1 kB	132,0 kB	[overzicht]
armhf	47,9 kB	96,0 kB	[overzicht]
i386	61,2 kB	160,0 kB	[overzicht]
mips64el	54,1 kB	176,0 kB	[overzicht]
mipsel	58,3 kB	179,0 kB	[overzicht]
ppc64el	59,4 kB	209,0 kB	[overzicht]
s390x	49,7 kB	153,0 kB	[overzicht]