Package: spaced (1.2.0-201605+dfsg-4)

[ Source: spaced  ]

alignment-free sequence comparison using spaced words

Spaced (Words) is a new approach to alignment-free sequence comparison. While most alignment-free algorithms compare the word-composition of sequences, spaced uses a pattern of care and don't care positions. The occurrence of a spaced word in a sequence is then defined by the characters at the match positions only, while the characters at the don't care positions are ignored. Instead of comparing the frequencies of contiguous words in the input sequences, this new approach compares the frequencies of the spaced words according to the pre-defined pattern. An information-theoretic distance measure is then used to define pairwise distances on the set of input sequences based on their spaced-word frequencies. Systematic test runs on real and simulated sequence sets have shown that, for phylogeny reconstruction, this multiple-spaced-words approach is far superior to the classical alignment-free approach based on contiguous word frequencies.

Other Packages Related to spaced

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC támogató programkönyvtár

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC támogató programkönyvtár

• dep: libgomp1 (>= 9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download spaced

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	58.3 kB	216.0 kB	[list of files]
amd64	59.4 kB	168.0 kB	[list of files]
arm64	52.3 kB	152.0 kB	[list of files]
armel	53.0 kB	151.0 kB	[list of files]
armhf	51.9 kB	111.0 kB	[list of files]
hppa (unofficial port)	63.5 kB	165.0 kB	[list of files]
i386	66.2 kB	179.0 kB	[list of files]
ia64 (unofficial port)	73.9 kB	301.0 kB	[list of files]
m68k (unofficial port)	59.2 kB	167.0 kB	[list of files]
mips64el	58.6 kB	223.0 kB	[list of files]
ppc64 (unofficial port)	62.4 kB	216.0 kB	[list of files]
ppc64el	62.0 kB	216.0 kB	[list of files]
riscv64	57.7 kB	128.0 kB	[list of files]
s390x	61.9 kB	180.0 kB	[list of files]
sh4 (unofficial port)	72.2 kB	215.0 kB	[list of files]
sparc64 (unofficial port)	51.0 kB	1,050.0 kB	[list of files]
x32 (unofficial port)	59.0 kB	159.0 kB	[list of files]