Pakket: ska (1.0+dfsg-4)

[ Bron: ska  ]

Split Kmer Analysis

SKA (Split Kmer Analysis) is a toolkit for prokaryotic (and any other small, haploid) DNA sequence analysis using split kmers. A split kmer is a pair of kmers in a DNA sequence that are separated by a single base. Split kmers allow rapid comparison and alignment of small genomes, and is particulalry suited for surveillance or outbreak investigation. SKA can produce split kmer files from fasta format assemblies or directly from fastq format read sequences, cluster them, align them with or without a reference sequence and provide various comparison and summary statistics. Currently all testing has been carried out on high-quality Illumina read data, so results for other platforms may vary.

Andere aan ska gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [arm64, ppc64el, s390x]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, mips64el, ppc64, riscv64, sh4, sparc64, x32]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

ska downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	133,7 kB	543,0 kB	[overzicht]
amd64	143,9 kB	451,0 kB	[overzicht]
arm64	121,9 kB	415,0 kB	[overzicht]
armel	119,9 kB	394,0 kB	[overzicht]
armhf	124,9 kB	314,0 kB	[overzicht]
hppa (unofficial port)	138,9 kB	436,0 kB	[overzicht]
i386	149,6 kB	482,0 kB	[overzicht]
ia64 (unofficial port)	175,0 kB	846,0 kB	[overzicht]
m68k (unofficial port)	117,8 kB	422,0 kB	[overzicht]
mips64el	125,3 kB	514,0 kB	[overzicht]
ppc64 (unofficial port)	138,2 kB	545,0 kB	[overzicht]
ppc64el	138,4 kB	543,0 kB	[overzicht]
riscv64	140,4 kB	363,0 kB	[overzicht]
s390x	142,4 kB	463,0 kB	[overzicht]
sh4 (unofficial port)	148,8 kB	414,0 kB	[overzicht]
sparc64 (unofficial port)	118,6 kB	1.122,0 kB	[overzicht]
x32 (unofficial port)	138,5 kB	426,0 kB	[overzicht]