Pakket: r-bioc-scran (1.26.2+dfsg-1)

[ Bron: r-bioc-scran  ]

BioConductor methods for single-cell RNA-Seq data analysis

Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.

Andere aan r-bioc-scran gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-2)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biocsingular

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• dep: r-bioc-bluster

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• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-delayedmatrixstats

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-limma

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• dep: r-bioc-metapod

  GNU R meta-analyses on P-Values of differential analyses

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-bh

  (Virtual) GNU R package to provide BH

• dep: r-cran-dqrng

  GNU R fast pseudo random number generators

• dep: r-cran-igraph

  GNU R network analysis and visualization

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• sug: r-bioc-hdf5array

  HDF5 backend for DelayedArray objects

• sug: r-bioc-monocle

  clustering, differential expression, and trajectory analysis for RNA-Seq

• sug: r-bioc-residualmatrix

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• sug: r-bioc-scaledmatrix

  creating a DelayedMatrix of scaled and centered values using GNU R

• sug: r-bioc-scater

  Single-Cell Analysis Toolkit for Gene Expression Data in R

• sug: r-bioc-scrnaseq

  Collection of Public Single-Cell RNA-Seq Datasets

• sug: r-cran-dynamictreecut

  Methods for Detection of Clusters in Hierarchical Clustering

• sug: r-cran-knitr

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• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

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Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	966,7 kB	1.371,0 kB	[overzicht]
arm64	950,2 kB	1.347,0 kB	[overzicht]
armel	949,7 kB	1.317,0 kB	[overzicht]
armhf	950,2 kB	1.249,0 kB	[overzicht]
i386	967,8 kB	1.381,0 kB	[overzicht]
mips64el	948,7 kB	1.515,0 kB	[overzicht]
mipsel	948,3 kB	1.421,0 kB	[overzicht]
ppc64el	963,4 kB	1.475,0 kB	[overzicht]
s390x	958,2 kB	1.387,0 kB	[overzicht]