Pakket: libbifrost-dev (1.3.1-1 en anderen)

[ Bron: bifrost  ]

static library and header files for libbifrost

Libbifrost-dev is the development library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.

 * Build, index, color and query the compacted de Bruijn graph
 * No need to build the uncompacted de Bruijn graph
 * Reads or assembled genomes as input
 * Output graph in GFA (can be visualized with Bandage), FASTA or binary
 * Graph cleaning: short tip clipping, etc.
 * Multi-threaded
 * No parameters to estimate with other tools
 * Exact or approximate k-mer search of queries

Andere aan libbifrost-dev gerelateerde pakketten

• dep: libbifrost0 (= 1.3.1-1) [niet arm64]

  library for parallel construction, indexing and querying of de Bruijn graphs

  dep: libbifrost0 (= 1.3.1-1+b1) [arm64]

libbifrost-dev downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.3.1-1	637,5 kB	5.213,0 kB	[overzicht]
amd64	1.3.1-1	588,8 kB	3.858,0 kB	[overzicht]
arm64	1.3.1-1+b1	576,0 kB	3.803,0 kB	[overzicht]
ia64 (unofficial port)	1.3.1-1	727,4 kB	5.395,0 kB	[overzicht]
loong64 (unofficial port)	1.3.1-1	1.705,5 kB	17.979,0 kB	[overzicht]
mips64el	1.3.1-1	612,3 kB	4.463,0 kB	[overzicht]
ppc64 (unofficial port)	1.3.1-1	603,5 kB	4.167,0 kB	[overzicht]
ppc64el	1.3.1-1	619,4 kB	4.138,0 kB	[overzicht]
riscv64	1.3.1-1	1.790,5 kB	18.705,0 kB	[overzicht]
s390x	1.3.1-1	610,5 kB	4.019,0 kB	[overzicht]
sparc64 (unofficial port)	1.3.1-1	536,7 kB	3.889,0 kB	[overzicht]