Pakket: kma (1.4.15-1 en anderen)

[ Bron: kma  ]

mapping genomic sequences to raw reads directly against redundant databases

KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particularly good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non- unique matches are resolved using the "ConClave" sorting scheme, and a consensus sequence are outputtet in addition to other common attributes.

Andere aan kma gerelateerde pakketten

• dep: libc6 (>= 2.29) [hppa]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.31) [m68k, sh4]

  dep: libc6 (>= 2.34) [niet alpha, hppa, ia64, m68k, sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

kma downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.4.15-1	212,8 kB	799,0 kB	[overzicht]
amd64	1.4.15-1	214,6 kB	592,0 kB	[overzicht]
arm64	1.4.15-1	202,4 kB	732,0 kB	[overzicht]
hppa (unofficial port)	1.3.23-1	136,9 kB	355,0 kB	[overzicht]
ia64 (unofficial port)	1.4.14-2	258,7 kB	1.177,0 kB	[overzicht]
m68k (unofficial port)	1.3.23-1	121,6 kB	328,0 kB	[overzicht]
mips64el	1.4.15-1	211,9 kB	824,0 kB	[overzicht]
ppc64 (unofficial port)	1.4.15-1	224,5 kB	860,0 kB	[overzicht]
ppc64el	1.4.15-1	228,4 kB	796,0 kB	[overzicht]
riscv64	1.4.15-1	231,2 kB	504,0 kB	[overzicht]
s390x	1.4.15-1	236,3 kB	684,0 kB	[overzicht]
sh4 (unofficial port)	1.3.23-1	166,7 kB	321,0 kB	[overzicht]
sparc64 (unofficial port)	1.4.15-1	189,3 kB	3.106,0 kB	[overzicht]
x32 (unofficial port)	1.4.15-1	170,9 kB	433,0 kB	[overzicht]